Last updated: 2021-10-21

Checks: 1 1

Knit directory: pair_con_select/

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The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

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The results in this page were generated with repository version 69efefb. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.Rproj.user/
    Ignored:    analysis/Archive/.DS_Store
    Ignored:    analysis/Archive/shinyapp/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    code/archive/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/depmap_alkati/.DS_Store
    Ignored:    data/depmap_alkati/Data_Raw/.DS_Store
    Ignored:    data/depmap_alkati/Data_Raw/CCLE/CCLE_RNAseq_ExonUsageRatio_20180929.gct
    Ignored:    data/tcga_brca_expression/
    Ignored:    data/tcga_luad_expression/
    Ignored:    data/tcga_skcm_expression/
    Ignored:    output/.DS_Store
    Ignored:    output/alkati_filtercutoff_allfilters.csv

Untracked files:
    Untracked:  README.html
    Untracked:  analysis/Archive/ks_results_forshiny.csv
    Untracked:  analysis/pairwisecomparisons_simulateddata.Rmd
    Untracked:  data/archive/
    Untracked:  data/depmap_alkati/archive/

Unstaged changes:
    Modified:   README.md
    Modified:   analysis/index.Rmd
    Deleted:    analysis/ks_results_forshiny.csv
    Deleted:    analysis/updated_resampling_strategy2.Rmd
    Deleted:    data/All_Data_V2.csv
    Deleted:    data/alkati_simulations_compiled_200_51121.csv
    Deleted:    data/all_data.csv
    Deleted:    data/depmap_alkati/To_do_depmap.docx
    Deleted:    data/skmel28_sos1_mekq56p_vemurafenib.csv

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 69efefb haiderinam 2021-10-21 Build site.
Rmd d689f67 haiderinam 2021-10-21 wflow_publish(“analysis/index.Rmd”)
html ac85566 haiderinam 2021-10-21 Build site.
Rmd 23537ac haiderinam 2021-10-21 October 2021 Upgrade
Rmd c511c2b haiderinam 2021-10-20 October 2021 Update
html 755195f haiderinam 2021-10-20 October 2021 Update
html ecbc6d8 haiderinam 2021-06-19 Build site.
Rmd 5e902a4 haiderinam 2021-06-19 updated method for pairwise comparisons
html a9f8d72 haiderinam 2021-06-19 Build site.
html ddc4475 haiderinam 2021-06-19 Build site.
html aca6e57 haiderinam 2021-06-19 Build site.
Rmd 427be8d haiderinam 2021-06-19 updated method for pairwise comparisons
html 6d50f8a haiderinam 2021-06-19 Build site.
html 89ed456 haiderinam 2021-06-14 Build site.
html 8bdea13 haiderinam 2021-06-14 Build site.
html 0d33f15 haiderinam 2021-06-14 Build site.
Rmd 8520286 haiderinam 2021-06-14 Updated website contents on 061421
html 37e1262 haiderinam 2021-03-26 Build site.
Rmd 53330b9 haiderinam 2021-03-26 wflow_publish(“analysis/index.Rmd”)
html 722e7fd haiderinam 2021-03-21 Build site.
html 0713ced haiderinam 2021-03-21 Build site.
Rmd 73ef9b5 haiderinam 2021-03-21 wflow_publish(“analysis/index.Rmd”)
html 8628af0 haiderinam 2019-09-24 Build site.
Rmd c9273be haiderinam 2019-09-24 Added shiny app url
html 1237a9d haiderinam 2019-09-13 Build site.
Rmd d6cccda haiderinam 2019-09-13 Updated and Resized Images for Thumbnails
html db748bf haiderinam 2019-09-13 Build site.
Rmd 84273f4 haiderinam 2019-09-13 Updated and Resized Images for Thumbnails
html ef1946b haiderinam 2019-09-13 Build site.
Rmd ee86dfc haiderinam 2019-09-13 Updated and Resized Images for Thumbnails #3
html 3e865ad haiderinam 2019-09-13 Build site.
Rmd 2842c90 haiderinam 2019-09-13 Updated Images for Thumbnails #3
html 8d78597 haiderinam 2019-09-13 Build site.
Rmd fbff709 haiderinam 2019-09-13 Updated Images for Thumbnails #2
html 47460db haiderinam 2019-09-13 Build site.
html 654f78b haiderinam 2019-09-13 Build site.
html 603e62d haiderinam 2019-09-13 Build site.
Rmd d7b36c1 haiderinam 2019-09-13 Updated Images for Thumbnails
html caa231e haiderinam 2019-03-07 Build site.
Rmd 5477bb6 haiderinam 2019-03-07 Added page for analysis on performing pairwise comparisons in
html 80e52c0 haiderinam 2019-03-06 Build site.
Rmd 79bf9a6 haiderinam 2019-03-06 Added CCLE analyses
html 6744c50 haiderinam 2019-03-06 Build site.
Rmd b7d812d haiderinam 2019-03-06 Published Fig 4 analysis analysis, added statistical test for fig 3 & 4
html 755da19 haiderinam 2019-02-20 Build site.
html 6a85fdc haiderinam 2019-02-20 Build site.
Rmd ead5e6b haiderinam 2019-02-20 Fixed link for EGFR Expression Analysis
html aff917b haiderinam 2019-02-20 Build site.
Rmd 6fec622 haiderinam 2019-02-20 Added EGFR Expression Analysis
html 227aa37 haiderinam 2019-02-20 Build site.
Rmd d60f046 haiderinam 2019-02-20 Changed theme # 2
html 4d0be94 haiderinam 2019-02-20 Build site.
html be5169a haiderinam 2019-02-20 Build site.
Rmd 66533e8 haiderinam 2019-02-20 Added images attempt #2
html 5ce6384 haiderinam 2019-02-19 Build site.
Rmd d5d11e6 haiderinam 2019-02-19 Added images #2
html 5f668d9 haiderinam 2019-02-19 Build site.
Rmd efc8178 haiderinam 2019-02-19 Added images and descriptions
html 0b5f5cb haiderinam 2019-02-19 Build site.
Rmd f3edec6 haiderinam 2019-02-19 Published Analysis on ALK expression levels in LUAD
html 4b082e4 haiderinam 2019-02-19 Build site.
Rmd ba899cb haiderinam 2019-02-19 Attempt #2 Published Analysis on ALK expression levels and initial mutual exclusivity
html 08e9438 haiderinam 2019-02-17 Build site.
Rmd 33e1acb haiderinam 2019-02-17 Published Analysis on ALK expression levels #3
html dfdb600 haiderinam 2019-02-17 Build site.
html 0cad4ec haiderinam 2019-02-16 Build site.
Rmd 257ca7e haiderinam 2019-02-16 Published Analysis on ALK expression levels and initial mutual exclusivity data
html 5d432fb haiderinam 2019-02-11 Build site.
Rmd 4c89be3 haiderinam 2019-02-11 Publish the initial files for myproject
html d46a9cb haiderinam 2019-02-11 Build site.
Rmd 644865d haiderinam 2019-02-11 Start workflowr project.

Pairwise Comparisons of Conditional Selection

Click here to be redirected to the github page that contains all my data.

What is in each directory:

  • Data: contains data downloaded prior to analyses.
  • Output: contains data that the code makes
  • Analysis: contains your Rmarkdown files with the code.
  • Docs: contain the html output from the Rmd files in the analysis directory.
  • Code: contains .R files that are functions that the Rmd files in the analysis folder use.