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Unstaged changes:
    Modified:   analysis/ALKATI_Filter_Cutoff_Analysis.Rmd
    Modified:   analysis/ALK_ExonImbalance_SKCM_Analysis.Rmd
    Modified:   analysis/TCGA_luad_data_parser.Rmd
    Modified:   analysis/alkati_cell_line_tae684_response.Rmd
    Modified:   analysis/baf3_alkati_transformations.Rmd
    Modified:   analysis/pairwise_comparisons_conditional_selection_simulated_cohorts.Rmd
    Deleted:    analysis/practice.Rmd
    Modified:   analysis/tcga_luad_data_parser_egfr.Rmd

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